A new single-cell proteomics pre-print from Juerg Straubhaar and Bogdan
Budnik et al., Bogdan along with Nikolai Slavov, developed the SCoPE-MS
approach for single-cell proteomics that is most commonly used at the
moment on Orbitrap mass spectrometer...
High impact single-cell proteomics (SCP) study in Cell Reports Methods
that links single-cell proteomes with phenotypes of interest. In the
paper, the authors introduce an approach referred to as functional
single-cell proteomic profiling (FUNpro). T...
There are few free software that might meet your immediate needs. pGlyco
has been recommended by number of experts in the field. It handles HCD
and ETD fragmentations. It handles both N-linked and O-linked
glycopeptides. Protein Prospector and MSFrag...